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For language-dependent output of AMR functions, such as mo_name(), mo_gramstain(), mo_type() and ab_name().

Usage

get_AMR_locale()

set_AMR_locale(language)

reset_AMR_locale()

translate_AMR(x, language = get_AMR_locale())

Arguments

language

Language to choose. Use one of these supported language names or ISO 639-1 codes: English (en), Arabic (ar), Bengali (bn), Chinese (zh), Czech (cs), Danish (da), Dutch (nl), Finnish (fi), French (fr), German (de), Greek (el), Hindi (hi), Indonesian (id), Italian (it), Japanese (ja), Korean (ko), Norwegian (no), Polish (pl), Portuguese (pt), Romanian (ro), Russian (ru), Spanish (es), Swahili (sw), Swedish (sv), Turkish (tr), Ukrainian (uk), Urdu (ur), or Vietnamese (vi).

x

Text to translate.

Details

The currently 28 supported languages are English (en), Arabic (ar), Bengali (bn), Chinese (zh), Czech (cs), Danish (da), Dutch (nl), Finnish (fi), French (fr), German (de), Greek (el), Hindi (hi), Indonesian (id), Italian (it), Japanese (ja), Korean (ko), Norwegian (no), Polish (pl), Portuguese (pt), Romanian (ro), Russian (ru), Spanish (es), Swahili (sw), Swedish (sv), Turkish (tr), Ukrainian (uk), Urdu (ur), and Vietnamese (vi). All these languages have translations available for all antimicrobial drugs and colloquial microorganism names.

To permanently silence the once-per-session language note on a non-English operating system, you can set the package option AMR_locale in your .Rprofile file like this:

# Open .Rprofile file
utils::file.edit("~/.Rprofile")

# Then add e.g. Italian support to that file using:
options(AMR_locale = "Italian")

And then save the file.

Please read about adding or updating a language in our Wiki.

Changing the Default Language

The system language will be used at default, if that language is supported. The language to be used is determined in this order:

  1. The package option AMR_locale, set by using e.g. set_AMR_locale("German") or by running e.g. options(AMR_locale = "German").

    Note that setting an R option only works in the same session. Save the command options(AMR_locale = "(your language)") to your .Rprofile file to apply it for every session. Run utils::file.edit("~/.Rprofile") to edit your .Rprofile file.

  2. The system variable LANG, as returned by Sys.getenv("LANG"), e.g. set by adding LANG="de_DE.utf8" to your .Renviron file in your home directory.

  3. The system variable LANGUAGE, but only if LANG is not set. Note that LANG is set on most Linux and macOS systems, in which case LANGUAGE has no effect.

  4. The system locale, as returned by Sys.getlocale("LC_COLLATE"), if neither LANG nor LANGUAGE is set.

Thus, if the package option AMR_locale is set, the system variables LANG and LANGUAGE will be ignored.

Examples

# Current settings (based on system language)
ab_name("Ciprofloxacin")
#> [1] "Ciprofloxacin"
mo_name("Coagulase-negative Staphylococcus (CoNS)")
#> [1] "Coagulase-negative Staphylococcus (CoNS)"

# setting another language
set_AMR_locale("Dutch")
#> ℹ Using Dutch (Nederlands) for the AMR package for this session.
ab_name("Ciprofloxacin")
#> [1] "Ciprofloxacine"
mo_name("Coagulase-negative Staphylococcus (CoNS)")
#> [1] "Coagulase-negatieve Staphylococcus (CNS)"

# setting yet another language
set_AMR_locale("German")
#> ℹ Using German (Deutsch) for the AMR package for this session.
ab_name("Ciprofloxacin")
#> [1] "Ciprofloxacin"
mo_name("Coagulase-negative Staphylococcus (CoNS)")
#> [1] "Koagulase-negative Staphylococcus (KNS)"

# set_AMR_locale() understands endonyms, English exonyms, and ISO 639-1:
set_AMR_locale("Deutsch")
#> ℹ Using German (Deutsch) for the AMR package for this session.
set_AMR_locale("German")
#> ℹ Using German (Deutsch) for the AMR package for this session.
set_AMR_locale("de")
#> ℹ Using German (Deutsch) for the AMR package for this session.
ab_name("amox/clav")
#> [1] "Amoxicillin/Clavulansäure"

# reset to system default
reset_AMR_locale()
#> ℹ Using the English language (English) for the AMR package for this session.
ab_name("amox/clav")
#> [1] "Amoxicillin/clavulanic acid"